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 Research > Publications 
 Publications    

 

Zeng C, Kouprina N, Zhu B, Cairo A, Hoek M, Cross G, Osoegawa K, Larionov V, de Jong P. Large-insert BAC/YAC libraries for selective re-isolation of genomic regions by homologous recombination in yeast. Genomics. 2001 Sep;77(1/2):27-34.

International Human Genome Sequencing Consortium. Initial sequencing and analysis of the human genome. Nature 409: 860-921 (2001). [published correction appears in Nature 412: 565-566 (2001)]

Weichenhan D, Kunze B, Winking H, van Geel M, Osoegawa K, de Jong PJ, Traut W. Source and component genes of a 6-200 Mb gene cluster in the house mouse.
Mamm Genome. 2001 Aug;12(8):590-4.

Fahrenkrug SC, Rohrer GA, Freking BA, Smith TP, Osoegawa K, Shu CL, Catanese JJ, de Jong PJ.
A porcine BAC library with tenfold genome coverage: a resource for physical and genetic map integration. Mamm Genome. 2001 Jun;12(6):472-4.

Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ. (2001) Integration of cytogenetic landmarks into the draft sequence of the human genome. The BAC Resource Consortium. Nature. 2001 Feb 15;409(6822):953-8.


McPherson JD, Marra M, Hillier L, Waterston RH, Chinwalla A, Wallis J, Sekhon M, Wylie K, Mardis ER, Wilson RK, Fulton R, Kucaba TA, Wagner-McPherson C, Barbazuk WB, Gregory SG, Humphray SJ, French L, Evans RS, Bethel G, Whittaker A, Holden JL, McCann OT, Dunham A, Soderlund C, Scott CE, Bentley DR, Schuler G, Chen HC, Jang W, Green ED, Idol JR, Maduro VV, Montgomery KT, Lee E, Miller A, Emerling S, Kucherlapati, Gibbs R, Scherer S, Gorrell JH, Sodergren E, Clerc-Blankenburg K, Tabor P, Naylor S, Garcia D, de Jong PJ, Catanese JJ, Nowak N, Osoegawa K, Qin S, Rowen L, Madan A, Dors M, Hood L, Trask B, Friedman C, Massa H, Cheung VG, Kirsch IR, Reid T, Yonescu R, Weissenbach J, Bruls T, Heilig R, Branscomb E, Olsen A, Doggett N, Cheng JF, Hawkins T, Myers RM, Shang J, Ramirez L, Schmutz J, Velasquez O, Dixon K, Stone NE, Cox DR, Haussler D, Kent WJ, Furey T, Rogic S, Kennedy S, Jones S, Rosenthal A, Wen G, Schilhabel M, Gloeckner G, Nyakatura G, Siebert R, Schlegelberger B, Korenberg J, Chen XN, Fujiyama A, Hattori M, Toyoda A, Yada T, Park HS, Sakaki Y, Shimizu N, Asakawa S, Kawasaki K, Sasaki T, Shintani A, Shimizu A, Shibuya K, Kudoh J, Minoshima S, Ramser J, Seranski P, Hoff C, Poustka A, Reinhardt R, Lehrach H. A physical map of the human genome. The International Human Genome Mapping Consortium. Nature. 2001 Feb 15;409(6822):934-41.

Osoegawa, K., Mammoser, A. G., Wu, C., Frengen, E., Zeng, C., Catanese, J. J., de Jong, P. J. (2001) A Bacterial Artificial Chromosome Library for Sequencing the Complete Human Genome, Genome Research, Vol. 11, Issue 3, 483-496, March 2001.

Eirik Frengen, Baohui Zhao, Steve Howe, Dieter Weichenhan, Kazutoyo Osoegawa, Elisabet Gjernes, Joel Jessee, Hanz Prydz, Clare Huxley, and Pieter J. de Jong (2000) Modular Bacterial Artificial Chromosome Vectors for Transfer of Large Inserts into Mammalian Cells. Genomics 58:118-126.

Osoegawa, K., Tateno, M., Woon, P.-Y., Frengen, E. Mammoser A. G., Catanese, J. J., Hayashizaki, Y., and de Jong, P. J. (2000) Bacterial Artificial Chromosome Libraries for Mouse Sequencing and Functional Analysis. Genome Research 10: 116-128.

Frengen, E., Weichenhan, D., Zhao, B., Osoegawa, K., van Geel, M., and de Jong, P.J. (1999) A Modular, Positive Selection Bacterial Artificial Chromosome Vector with Multiple Cloning Sites. Genomics 58: 250-253.

Hoskins, R., Nelson, C.R., Berman, B.P., Laverty, T.R., George, R.A., Ciesiolka, L., Naeemuddin, M., Arenson, A.D., Durbin, J., David, R.G., Tabor, P.E., Bailey, M.R., DeShazo, D.R., Catanese, J., Mammoser, A., Osoegawa, K., de Jong, P.J., Celniker, S.E., Gibbs, R.A., Rubin, G.M., and Scherer, St. E. (2000) A BAC-based physical map of the major autosomes of Drosophila melanogaster. Science. 2000 Mar 24;287(5461):2271-4.

Osoegawa, K., Woon, P.Y., Zhao, B., Frengen, E., Tateno, M., Catanese, J.J. and de Jong, P.J. (1998) An improved approach for construction of bacterial artificial chromosome libraries. Genomics 51:1-8.


Liu, J., Aoki, M., Illa, I., Wu, C., Fardeau, M., Angelini, C., Serrano, C., Urtizberea, J.A., Hentati, F., Hamida, M.B., Bohlega, Sa., Culper, E.J., Amato, A.A., Bossie, K., Oeltjen, J., Bejaoui, K., McKenna-Yasek, D., Hosler, B.A., Schurr, E., Arahata, K., de Jong, P.J. and Brown, R.H. 1998. Dysferlin, a novel skeletal muscle gene, is mutated in Miyoshi myopathy and limb girdle muscular dystrophy. Nature Genet. 20:31-36.


Woon, P.Y., Osoegawa, K., Kaisaki, P.J., Zhao, B.H., Catanese, J.J., Gauguier, D., Cox, R., Levy, E.R., Lathrop, G.M., Monaco, A.P. and de Jong, P.J. 1998. Construction and characterization of a 10-fold genome equivalent rat P1 derived artificial chromosome library. Genomics 50(3):306-316.


Liu, J., Wu, C., Bossie, K., Bejaoui, K., Hosler, B.A., Gingrich, J.C., Ben Hamida, M., Hentati, F., Schurr, E., de Jong, P.J. and Brown, R.H. Jr. (1998) Generation of a 3-Mb PAC contig spanning the Miyoshi myopathy/limb-girdle muscular dystrophy (MM/LGMD2B) locus on chromosome 2p13. Genomics. 49(1):23-29.


Higgins, M.J., Day, C.D., Smilinich, N.J., Ni, L., Cooper, P.R., Nowak, N.J., Davies, C., de Jong, P.J., Hejtmancik, F., Evans, G.A., Smith, R.J. and Shows, T.B. (1998) Contig maps and genomic sequencing identify candidate genes in the usher 1C locus. Genome Res. 8(1):57-68.


Reid, L.H., Davies, C., Cooper, P.R., Crider-Miller, S.J., Sait, S.N.J., Nowak, N.J., Evans, G., Stanbridge, E.J., de Jong, P., Shows, T.B., Weissman, B.E. and Higgins, N.J. (1997) A 1-Mb physical map and PAC contig of the imprinted domain in 11p15.5 that contains the TAPA1 and the BWSCR1/WT2 region. Genomics 43:366-375.

Cooper, P.R., Nowak, N.J., Higgins, M.J., Simpson, S.A., Marquardt, A., Stoehr, H., Weber, B.H., Gerhard, D.S., de Jong, P.J. and Shows, T.B. (1997) A sequence-ready high-resolution physical map of the best macular dystrophy gene region in 11q12-q13. Genomics 41(2):185-192

Hubert, R.S., Mitchell, S., Chen, X.N., Ekmekji, K., Gadomski, C., Sun, Z., Noya, D., Kim, U.J., Chen, C., Shizuya, H., Simon, M., de Jong, P.J. and Korenberg, J.R. (1997) BAC and PAC contigs covering 3.5 Mb of the Down syndrome congenital heart disease region between D21S55 and MX1 on chromosome 21. Genomics 41(2):218-226.


Guru, S.C., Olufemi, S.E., Manickam, P., Cummings, C., Gieser, L.M., Pike, B.L., Bittner, M,L., Jiang, Y., Chinault, A.C., Nowak, N.J., Brzozowska, A., Crabtree, J.S., Wang, Y., Roe, B.A., Weisemann, J.M., Boguski, M.S., Agarwal, S.K., Burns, A.L., Spiegel, A.M., Marx, S.J., Flejter, W.L., de Jong, P.J., Collins, F.S. and Chandrasekharappa, S.C. (1997) A 2.8-Mb clone contig of the multiple endocrine neoplasia type 1 (MEN1) region at 11q13. Genomics 42(3):436-445.


Rogaev, E.I., Sherrington, R., Wu, C., Levesque, G., Liang, Y., Rogaeva, E.A., Ikeda, M., Holman, K., Lin, C., Lukiw, W.J., de Jong, P.J., Fraser, P.E., Rommens, J.M. and St. George-Hyslop, P. (1997) Analysis of the 5' sequence, genomic structure, and alternative splicing of the presenilin-1 gene (PSEN1) associated with early onset Alzheimer disease. Genomics 40(3):415-424.


Frengen, E., Thomsen, P.D., Brede, G., Solheim, J., de Jong, P.J. and Prydz, H. (1997) The gene cluster containing the LCAT gene is conserved between human and pig. Cytogenet. Cell Genet. 76(1-2):53-57.

Nechiporuk, T., Nechiporuk, A., Sahba, S., Figueroa, K., Shibata, H., Chen, X.-N., Korenberg, J.R., de Jong, P.J. & Pulst, S.M. (1997). A high-resolution PAC and BAC map of the Sca2 region. Genomics 44, 321-329.


Ranta, S., Lehesjoki, A.E., de Fatima Bonaldo, M., Knowles, J.A., Hirvasniemi, A., Ross, B., de Jong, P.J., Soares, M.B., de la Chapelle, A. and Gilliam, T.C. (1997) High-resolution mapping and transcript identification at the progressive epilepsy with mentalretardation locus on chromosome 8p. Genome Res. 7(9):887-896.

Frengen, E., Wu, C. and de Jong, P.J. (1997) Transfer of small YACs to E. coli as large circular plasmids. Genetic Analysis 14(2):55-59.


Osoegawa, K., de Jong P,J., Frengen, E. and Ioannou, P.A. 1999. In Current protocols in human genetics (eds. N.C. Dracopoli, et al.), pp. 5.15.1-5.15.33. Wiley, New York.


Wu, C., Zhu, S., Simpson, S. and de Jong, P.J. (1996) DOP-vector PCR: A method for rapid isolation and sequencing of insert termini from PAC clones. Nucleic Acids Research 24,2614-2616.


Osoegawa, K, Susukida, R., Okana, S., Kudoh, J., Minoshima, S., Shimizu, H., de Jong, P.J., Groet, J., Ives, J., Lehrach, H., Nizetic. D. and Soeda, E. (1996) An integrated map with cosmid/PAC contigs of a 4-Mb Down Syndrome critical region. Genomics 32,375-387.


Roy, N., Mahadevan, M.S., McLean, M., Shutler, G., Yaraghi, Z., Farahani, R., Baird, S., Besner-Johnston, A., Lefebvre, C., Kang, X., Salih, M., Aubry, H., Tamai, K., Guan, X., Ioannou, P, Crawford, T.O., de Jong, P.J., Surh, L., Ikeda, J.-E., Korneluk, R.G. and MacKenzie, A. (1995) The gene for Neuronal Apoptosis Inhibitory Protein is partially deleted in individuals with Spinal Muscular Atrophy. Cell,167-178.


Soeda, E., Hou, D.-X., Osoegawa, K., Atsuchi, Y., Yamagata, T., Shimokawa, T., Kishida, H., Soeda, E., Okano, S., Chumakov, I., Cohen, D., Raff, M., Gardiner, K., Graw, S.L., Patterson, D., de Jong, P., Ashworth, L.K., Slezak, T., and Carrano, A.V. (1995) Cosmid assembly and anchoring to human chromosome 21.Genomics 25,73-84.

Ioannou, P. Amemiya, C.T., Garnes, J., Kroisel, P.M., Shizuya, H., Chen, C., Batzer, M.A. and de Jong, P.J. (1994) A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genetics 6:84-89.


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